AMBER-9 Tutorial

"Standard" Simulation - (as file, 3,750 Kb)

Calculation using non-standard residue(s) - (as file, 50,055 Kb)

Estimation of protein-ligand binding energy in non-covalent complex - (as file, 47,719 Kb)

Analysis of MD results - (as file, 22,016 Kb)

QM/MM Calculations - (as file, 637 Kb)

Related PPT files:

Amber Setup

Amber Standard Setup

Amber Nonstandard Setup

MM-PBSA in Amber9

Amber9 Simple Analysis

Amber9: QM/MM